HomeBlogCode Sandbox Options for AI Agents: 5 Ways to Run Generated Code Safely

Code Sandbox Options for AI Agents: 5 Ways to Run Generated Code Safely

Choose a code sandbox for AI agents with the right isolation, state, and cost model. Compare 5 options, plus practical security and shipping guidance.

Code Sandbox Options for AI Agents: 5 Ways to Run Generated Code Safely

When you start shipping features powered by AI that can code, the hard part is rarely the prompt. The hard part is deciding where that generated code is allowed to run.

A good code sandbox gives your agent a place to build, test, and debug without touching your production machines, secrets, or customer data. It is similar to an online IDE or cloud IDE in the sense that you get compute on demand, but it is purpose-built for untrusted execution, automation, and tight lifecycle control. Think “code runner with guardrails”, not “developer workstation in a browser”.

In practice, most solo founders and tiny teams end up needing two things at once: a sandbox for fast iteration and a backend that can carry state, auth, files, realtime updates, and notifications once the demo becomes a product. This guide focuses on the first part. The code sandbox decision.

Why a code sandbox matters when AI code generators start executing

The moment you let an agent execute code, you are no longer only reviewing text. You are handing over CPU, memory, network, and file access. That changes the failure modes.

The first pattern we see is secret exposure. Agents are great at “helpfully” printing environment variables, dumping config files, or running git commands that surface credentials. If the code runs anywhere near your real infrastructure, the blast radius is immediate. OWASP’s guidance on secrets management exists for a reason: secrets do not belong in source code, logs, or uncontrolled runtimes. Even your prototypes deserve that discipline, because prototypes become production faster than anyone plans. The OWASP Secrets Management Cheat Sheet is a solid baseline for what to avoid and what to automate.

The second pattern is resource abuse, often accidental. AI code generators can create infinite loops, fork bombs, or runaway dependency installs. A sandbox lets you cap CPU and memory, enforce timeouts, and kill the environment without taking your app down.

The third pattern is reproducibility. When a user reports that “the agent broke something”, you need a way to replay the run. Sandboxes that support snapshots, stateful workspaces, or durable logs make debugging feel like software engineering again, not a séance.

Finally, there is a security principle behind all of this: least privilege. Give the agent only the access required for the task, no more. NIST defines least privilege as allowing only the authorized accesses necessary to complete assigned tasks. See NIST SP 800-53 (AC-6) for the canonical wording and control context.

What to evaluate before you pick a sandbox

Most “best online IDE” lists focus on human convenience. For agent execution, the trade-offs are different. Before you choose, get clear on four dimensions that show up in real projects.

Isolation model comes first. Containers can be enough for many tasks, but for high-risk workloads you may want stronger isolation boundaries like microVMs, or container runtimes designed for sandboxing. Technologies like gVisor and Kata Containers exist specifically to tighten that boundary between the workload and the host.

Statefulness is next. Some sandboxes are intentionally ephemeral. They start, run, and disappear. Others are designed to feel like a long-lived workspace that can “sleep” and resume. Ephemeral is simpler and safer. Stateful is faster for iterative agent workflows because you keep dependencies, caches, and intermediate artifacts.

Time-to-first-run and resume latency matters more than people expect. If your agent needs to execute ten tiny steps, slow startup becomes the bottleneck. This is why snapshot-based approaches have become popular. MicroVM tech like Firecracker is frequently used underneath to make VM-style isolation fast enough for interactive workflows.

Cost predictability is the final axis, especially for solo founders. Some platforms feel cheap until you start leaving sandboxes alive, streaming logs, or scaling concurrent runs. Decide upfront whether you want scale-to-zero, hard TTLs, or explicit concurrency limits.

A useful way to frame it is: are you building a safe code runner for your own agent, or are you building a product that exposes an online IDE-like experience to users? The second case usually demands stronger isolation, better observability, and stricter quotas.

Five sandbox platforms that show up in real agent stacks

Below are five options we see builders reach for when they need a code sandbox that an agent can control programmatically. They overlap, but each one has a “home field advantage” depending on your workflow.

1) Modal. Serverless compute plus sandboxes for Python-first work

Modal sandboxes fit well when your agent workflows look like data or ML workloads: fetch data, transform, run evaluations, generate artifacts, repeat. Modal’s model is “define workloads as code, run on managed infrastructure”, which aligns nicely with agent systems that produce repeatable pipelines.

Where it tends to work best is when you want your sandbox to be part of a broader serverless story. For example, an agent that runs nightly evaluations, generates a report, and stores outputs somewhere durable. You want the same platform to run both the sandboxed step and the scheduled job.

The trade-off is that if you want something that behaves like a long-lived workspace with a file tree that persists between agent sessions, you will need to design for that explicitly. Modal is strong when you treat sandboxes as units of execution, not as a developer desktop.

2) Blaxel. Perpetual sandboxes that feel stateful

Blaxel positions its sandboxes as fast-resuming compute environments, which is a big deal for agent loops that iterate constantly. The key idea is that you can “sleep” without paying like you are running a full-time VM, then resume quickly when the agent wakes up.

If your agent keeps a lot of context on disk, compiles dependencies, or maintains an internal workspace, stateful sandboxes reduce friction. They also make it easier to reproduce failures because the filesystem and environment stay closer to what the agent last touched.

If you want to explore the concept, start with the documentation that describes how these sandboxes are used in practice. The Blaxel sandbox guide is the most direct entry point we have seen.

The trade-off is operational: stateful environments require clearer hygiene. You need TTL policies, cleanup rules, and storage controls. Otherwise, what felt like a “cheap scale-to-zero” setup can turn into an untracked cost center.

3) Daytona. Stateful, elastic sandboxes aimed directly at AI-generated code

Daytona started in the cloud dev environment space and moved toward “run AI code safely”. That’s a subtle but important shift. It is less about a human editor and more about giving an agent full programmatic control over an isolated runtime.

Daytona is a good fit when you care about the ergonomics of agent tooling. You typically want the ability to clone repositories, run commands, inspect files, and keep a workspace alive long enough to complete multi-step tasks.

Daytona’s docs are also useful if you are trying to understand isolation layers beyond plain Docker. Start with the Daytona documentation to see how they frame sandbox lifecycle and control surfaces.

The trade-off is that once you expose rich capabilities to an agent (git operations, file management, process execution), permission design matters more. In other words, the sandbox becomes a miniature production system, and you need to treat it that way.

4) E2B. Code-interpreter style sandboxes via SDKs

E2B is popular with builders who want something close to “Code Interpreter, but under your control”. If your app needs to run user- or agent-generated snippets for analysis, plotting, light backend tasks, or quick experiments, this model tends to feel intuitive.

What makes it practical is the SDK-first workflow. Instead of asking “how do I provide a cloud IDE?”, you ask “how does my service create a sandbox, run a command, and capture output?”. You can see the primitives in the E2B sandbox SDK reference.

If you prefer to think in concrete steps, a typical Python-driven loop looks like this in real systems: the service creates a sandbox with a short time limit, uploads or writes the generated code into the sandbox filesystem, executes it with strict timeouts, then pulls back logs and artifacts. That’s enough to support many “agent writes code, runs tests, summarizes results” flows without ever giving the agent access to your real servers.

The trade-off is that code-interpreter style sandboxes are often optimized for execution, not for deeply stateful workspaces. If you need long-lived environments or heavy builds, you may need a different option or a hybrid approach.

5) Together Code Sandbox. MicroVM-based environments built for AI coding products

Together’s Code Sandbox is notable for leaning into microVMs and snapshotting. For teams building AI coding tools at scale, this is often the difference between an experience that feels sluggish and one that feels instantaneous.

Together publishes specific performance claims in their own materials, including starting VMs from a snapshot in about 500 ms and creating them from scratch in under 2.7 seconds (P95). If you want the canonical references, see the Together Code Sandbox documentation and the Together Code Sandbox overview.

This approach is especially relevant when you want strong isolation by default. MicroVM-based sandboxes are appealing when you are building a product where unknown code runs frequently, and you want boundaries closer to “VM isolation” than “shared host kernel”.

The trade-off is ecosystem gravity. If your stack already uses Together’s AI cloud offerings, the integration story can be compelling. If not, you should weigh whether you are adopting a broader platform or only a sandbox component.

How to choose. Match sandbox type to the situations you actually face

The fastest way to pick is to anchor on scenarios you can recognize from your own build cycle.

If your agent primarily runs short-lived tasks like formatting code, running unit tests, or executing a small evaluation, an ephemeral sandbox tends to be the simplest. You get clean isolation, easy cleanup, and fewer surprises. This is where “code runner with strict TTL” shines.

If your agent behaves more like a long-running collaborator. It checks out repos, installs dependencies, iterates on changes, and returns later to continue. Then you will feel the pain of rehydrating state on every step. In those cases, stateful or fast-resuming sandboxes often make the difference between “cool demo” and “usable workflow”.

If you are building a user-facing AI coding product that resembles a cloud IDE, you should bias toward the strongest isolation model you can afford, plus aggressive quotas. Multi-tenant execution is where mistakes become incidents.

A simple mental checklist helps avoid analysis paralysis:

  • If you need fast iteration over hours or days, prefer stateful or snapshot-based sandboxes, and commit to cleanup policies.
  • If you need maximum safety for unknown code, prefer microVM-style isolation or hardened runtimes.
  • If you need predictable spend, choose explicit concurrency limits, TTLs, and scale-to-zero behavior.

Security basics that keep agent sandboxes from becoming your next incident

A sandbox is not magic. It is a control surface. Most of the security wins come from how you wire it.

Start by designing permissions around least privilege, not convenience. If a run only needs outbound internet to fetch dependencies, do not allow inbound ports. If it only needs read-only access to a repository, avoid giving it write access until a later step.

Next, treat secrets as a first-class boundary. Follow OWASP’s guidance to avoid hardcoding secrets and to centralize how secrets are injected and rotated. The OWASP Secrets Management Cheat Sheet is a pragmatic reference you can keep open while you wire your first runs.

Then, cap resources aggressively. Put ceilings on CPU, memory, disk usage, and runtime duration. Many agent failures are not “attacks”. They are just bugs at machine speed.

Finally, invest in observability early. Keep structured logs of what the agent asked to run, what actually executed, and what artifacts were produced. Debuggability is part of safety. If you cannot answer “what happened?”, you cannot safely automate more.

Sandboxes are not the product. Getting from safe execution to a shippable backend

Once your agent can safely run code, you will hit the next bottleneck: turning outputs into a working app that users can sign into, use, and come back to tomorrow. That is where many solo founders lose weeks reinventing a backend.

The pattern that works is separating concerns. Let the sandbox do what it is good at. Execute untrusted code, compile, test, and generate artifacts. Then push validated changes into a real system with durable state, auth, storage, and realtime events.

That is exactly why we built SashiDo - Backend for Modern Builders. Once your prototype needs persistence, you can rely on our built-in MongoDB database with CRUD APIs, user management with social logins, file storage backed by AWS S3 with an integrated CDN, realtime sync over WebSockets, scheduled jobs, and serverless functions you can deploy in seconds. If you are coming from the Parse ecosystem, our developer docs make it straightforward to connect your clients and ship.

If you are worried about scaling surprises, it helps to understand how compute scaling works before you need it. Our write-up on Engines and how to scale workloads explains when you actually need more horsepower and how the cost model is calculated.

Conclusion. Pick a code sandbox you can control, then ship with confidence

A code sandbox is the safety layer that lets AI code generators be useful without being dangerous. Whether you choose an ephemeral container-style sandbox, a stateful workspace that can sleep and resume, or a microVM-based system with snapshotting, the winning move is the same: constrain execution, log everything, and separate untrusted runs from your durable backend.

When you do that, you can move faster without gambling with production. Your agent can iterate in isolation, you can review outputs like normal engineering work, and your users get a reliable product.

If your agent workflows are ready to turn into a real app, it helps to pair your code sandbox with a backend you do not have to rebuild from scratch. You can explore SashiDo - Backend for Modern Builders to launch a backend in minutes with database, auth, storage, realtime, jobs, and serverless functions, then start with our free trial and verify the latest numbers on the pricing page.

Sources and further reading

If you want to go deeper on isolation and safe execution, these are the references we rely on when designing agent-friendly runtimes:

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